Problem with Python 3.5.3(64bit) and installing scipy
Good day
I am busy going through the tutorial of Practical Machine Learning Tutorial with Python Introduction, and while trying to install scipy using "pip install scipy" i am getting the following error
Note: if you need reliable uninstall behavior, then install with pip instead of using `setup.py install`:
- `pip install .` (from a git repo or downloaded source release) - `pip install scipy` (last SciPy release on PyPI)
lapack_opt_info: lapack_mkl_info: libraries mkl_rt not found in ['c:userssvandykappdatalocalprogra mspythonpython35lib', 'C:', 'c:userssvandykappdatalocalprogram spythonpython35libs'] NOT AVAILABLE
openblas_lapack_info: libraries openblas not found in ['c:userssvandykappdatalocalprog ramspythonpython35lib', 'C:', 'c:userssvandykappdatalocalprogr amspythonpython35libs'] NOT AVAILABLE
atlas_3_10_threads_info: Setting PTATLAS=ATLAS c:userssvandykappdatalocalprogramspythonpython35libsite-packagesnu mpydistutilssystem_info.py:1051: UserWarning: Specified path C:projectsnumpy -wheels-jc1clwindows-wheel-builderatlas-buildsatlas-3.11.38-sse2-64lib is in valid. pre_dirs = system_info.get_paths(self, section, key) <class 'numpy.distutils.system_info.atlas_3_10_threads_info'> NOT AVAILABLE
atlas_3_10_info: <class 'numpy.distutils.system_info.atlas_3_10_info'> NOT AVAILABLE
atlas_threads_info: Setting PTATLAS=ATLAS <class 'numpy.distutils.system_info.atlas_threads_info'> NOT AVAILABLE
atlas_info: <class 'numpy.distutils.system_info.atlas_info'> NOT AVAILABLE
c:userssvandykappdatalocalprogramspythonpython35libsite-packagesnu mpydistutilssystem_info.py:572: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() lapack_info: libraries lapack not found in ['c:userssvandykappdatalocalprogra mspythonpython35lib', 'C:', 'c:userssvandykappdatalocalprogram spythonpython35libs'] NOT AVAILABLE
c:userssvandykappdatalocalprogramspythonpython35libsite-packagesnu mpydistutilssystem_info.py:572: UserWarning: Lapack (http://www.netlib.org/lapack/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [lapack]) or by setting the LAPACK environment variable. self.calc_info() lapack_src_info: NOT AVAILABLE
c:userssvandykappdatalocalprogramspythonpython35libsite-packagesnu mpydistutilssystem_info.py:572: UserWarning: Lapack (http://www.netlib.org/lapack/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [lapack_src]) or by setting the LAPACK_SRC environment variable. self.calc_info() NOT AVAILABLE
Running from scipy source directory. non-existing path in 'scipyintegrate': 'quadpack.h' Traceback (most recent call last): File "<string>", line 1, in <module> File "C:UserssvandykAppDataLocalTemppip-build-y0z_2_r5scipysetup.p y", line 416, in <module> setup_package() File "C:UserssvandykAppDataLocalTemppip-build-y0z_2_r5scipysetup.p y", line 412, in setup_package setup(**metadata) File "c:userssvandykappdatalocalprogramspythonpython35libsite-pac kagesnumpydistutilscore.py", line 135, in setup config = configuration() File "C:UserssvandykAppDataLocalTemppip-build-y0z_2_r5scipysetup.p y", line 336, in configuration config.add_subpackage('scipy') File "c:userssvandykappdatalocalprogramspythonpython35libsite-pac kagesnumpydistutilsmisc_util.py", line 1029, in add_subpackage caller_level = 2) File "c:userssvandykappdatalocalprogramspythonpython35libsite-pac kagesnumpydistutilsmisc_util.py", line 998, in get_subpackage caller_level = caller_level + 1) File "c:userssvandykappdatalocalprogramspythonpython35libsite-pac kagesnumpydistutilsmisc_util.py", line 935, in _get_configuration_from_setup_ py config = setup_module.configuration(*args) File "scipysetup.py", line 15, in configuration config.add_subpackage('linalg') File "c:userssvandykappdatalocalprogramspythonpython35libsite-pac kagesnumpydistutilsmisc_util.py", line 1029, in add_subpackage caller_level = 2) File "c:userssvandykappdatalocalprogramspythonpython35libsite-pac kagesnumpydistutilsmisc_util.py", line 998, in get_subpackage caller_level = caller_level + 1) File "c:userssvandykappdatalocalprogramspythonpython35libsite-pac kagesnumpydistutilsmisc_util.py", line 935, in _get_configuration_from_setup_ py config = setup_module.configuration(*args) File "scipylinalgsetup.py", line 20, in configuration raise NotFoundError('no lapack/blas resources found') numpy.distutils.system_info.NotFoundError: no lapack/blas resources found
---------------------------------------- Command "c:userssvandykappdatalocalprogramspythonpython35python.exe -u - c "import setuptools, tokenize;__file__='C:UserssvandykAppDataLocalTem ppip-build-y0z_2_r5scipysetup.py';f=getattr(tokenize, 'open', open)(__file __);code=f.read().replace('rn', 'n');f.close();exec(compile(code, __file__, ' exec'))" install --record C:UserssvandykAppDataLocalTemppip-19_8sne2-recor dinstall-record.txt --single-version-externally-managed --compile" failed with error code 1 in C:UserssvandykAppDataLocalTemppip-build-y0z_2_r5scipy"
Can anyone tell me what i am doing wrong?
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On windows, installing these modules can sometimes be a challenge. One option is to download the .whl from here: http://www.lfd.uci.edu/~gohlke/pythonlibs/#scipy
You download the .whl, then use pip to install that .whl instead.
-Harrison 7 years ago
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Thank you, This now sucessfully installed the scipy package Yipeee...
All working finally
-Clearscreen101 7 years ago
Last edited 7 years ago
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